Detect peaks that have gap of F/R count

 You can detect peaks that have gap of forward/reverse feature count. This document describes how to detect peaks that have gap of forward/reverse feature count.
  1. Please right-click the label of the track and click [Count Reads FR] in the popup menu.

    countReadFRStart_jpg

  2. GenomeJack displays the Count Reads Of Peak dialog. Please click [CountReadsFR] after finishing the settings.

    countReadFR1_jpg

    Features select feature track.
    Margin
    set margin, between peaks.
    when intervals of 2 peaks are less than the margin,
    GenomeJack takes as the same range.
    Peak Threshold set threshold of peak.
    Subtraction Rate Threshold set threshold of F/R subtraction rate

  3. GenomeJack detects peaks that have gap of forward/reverse feature count. Please click [Export] if you want to export result.

    countReadFR2_jpg