Create new track from existing track

 You can create a new track from the data of existing tracks. This document describes how to create a new track from the data of existing track.
  1. Please right-click (in case of Mac OS X : hold the command key down and click) the label of the track and click [Create New Track] in the popup menu.

    createNewTrackStart_jpg

  2. GenomeJack displays the Create New Track dialog.

    createNewTrackFrom1_jpg

  3. Please click [Edit] of Add Reference if you want add annotation information to track. GenomeJack displays the Create New Features dialog. Please click [Add Reference].

    createNewTrackReferenceList1_jpg

  4. GenomeJack displays the Add dialog. Please click [OK] after finishing the settings.

    createNewTrackAddReference_jpg

    Reference Feature

    select track which has annotation information.

    Property Name

    select the property of annotation information.

    Condition

    set conditions to be consistent feature.


    Conditions you can set is defined in the following table.

    Exact Match

    give an annotation information whose start and end position is equivalent to that of the track you selected.

    Loose Match

    give an annotation information whose range is the nearest from that you set (upstream “X” from start and downstream “Y” from end).

    Contain

    give an annotation information which has the broadest range between start and end position.

    Loose Contain

    give an annotation information which has the broadest range in that you set (upstream “X” from start and downstream “Y” from end).

    Upstream

    give an annotation information which has the broadest range between start and upstream “X” from that.

    Downstream

    give an annotation information which has the broadest range between end and downstream “X” from that.

    Promoter

    give an annotation information which has the broadest range between upstream “X” and “Y” from start.


  5. Please click [OK] of the Create New Features dialog.

    createNewTrackReferenceList2_jpg

  6. Add Reference has been renovated settings.

    createNewTrackFrom2_jpg

  7. Please click [Edit] of Filter, if you want add filtering settings. GenomeJack displays the Set Feature Filter dialog. Please click [OK] after finishing the settings.

    createNewTrackSetFilter_jpg

  8. Filter has been renovated settings.

    createNewTrackFrom3_jpg

  9. Please click [OK]. A new track has been created.

    createNewTrackEnd_jpg