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A file is quickly analyzed by right click! -
Parameters are also easily set by GUI!
Easy to Analyze
You can analyze data using GenomeJack Analysis's GUI. No Linux skill is needed.
Various Analysis tools
Wide variety of secondary analysis tools, such as RNA-Seq, ChIP-Seq are ready to use. Any type of NGS research needs is acceptable.
Visualized by GenomeJack Browser!
Analysis results are automatically processed to be viewable on GenomeJack Browser. As soon as data analysis finishes, results can be ready to view on it.
List of Analysis Tool
| Analysis Field | Tool Name | URL |
|---|---|---|
| Mapping | BWA | http://bio-bwa.sourceforge.net/ |
| Bowtie | http://bowtie-bio.sourceforge.net/index.shtml | |
| Bowtie2 | http://bowtie-bio.sourceforge.net/bowtie2/index.shtml | |
| RNA-Seq | Tophat | http://tophat.cbcb.umd.edu/ |
| Cufflinks | http://cufflinks.cbcb.umd.edu/ | |
| ChIP-Seq | MACS | https://github.com/taoliu/MACS/ |
| Mutation Analysis | GATK-lite | http://www.broadinstitute.org/gatk/download |
| samtools mpileup | http://samtools.sourceforge.net/ | |
| SnpEff | http://snpeff.sourceforge.net/ | |
| cnD | http://www.sanger.ac.uk/resources/software/cnd/ | |
| Utility | Fastx toolkit | http://hannonlab.cshl.edu/fastx_toolkit/ |
| FastQC | http://www.bioinformatics.babraham.ac.uk/projects/fastqc/ |