Easy to Analyze

You can analyze data using GenomeJack Analysis's GUI. No Linux skill is needed.

Various Analysis tools

Wide variety of secondary analysis tools, such as RNA-Seq, ChIP-Seq are ready to use. Any type of NGS research needs is acceptable.

Visualized by GenomeJack Browser!

Analysis results are automatically processed to be viewable on GenomeJack Browser. As soon as data analysis finishes, results can be ready to view on it.

List of Analysis Tool

Analysis Field Tool Name URL
Mapping BWA http://bio-bwa.sourceforge.net/
Bowtie http://bowtie-bio.sourceforge.net/index.shtml
Bowtie2 http://bowtie-bio.sourceforge.net/bowtie2/index.shtml
RNA-Seq Tophat http://tophat.cbcb.umd.edu/
Cufflinks http://cufflinks.cbcb.umd.edu/
ChIP-Seq MACS https://github.com/taoliu/MACS/
Mutation Analysis GATK-lite http://www.broadinstitute.org/gatk/download
samtools mpileup http://samtools.sourceforge.net/
SnpEff http://snpeff.sourceforge.net/
cnD http://www.sanger.ac.uk/resources/software/cnd/
Utility Fastx toolkit http://hannonlab.cshl.edu/fastx_toolkit/
FastQC http://www.bioinformatics.babraham.ac.uk/projects/fastqc/