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Large data such as BAM, etc., is also smoothly displayed by GenomeJack Browser! -
Jumps from annotation to genome with table view!
Smooth Data Display
GenomeJack Browser is the genome browser for the next generation sequencer.
Feature is that smooth and bouncy browsing even for mass read such as NGS
Compatible to Various Formats
Compatible to various NGS data formats to display with various types.
This is the function what I needed!
So many convenient functions, such as bookmarking,annotation table view, url link, and so on...
List of Available Formats
Almost all of formats required for NGS analysis are available.
| Name | Description | URL |
|---|---|---|
| SAM/BAM | Mapped Read in Genome | http://samtools.sourceforge.net/ |
| BED/BEDGraph | Genome Annotation Information | https://genome.ucsc.edu/FAQ/FAQformat.html#format1, https://genome.ucsc.edu/goldenPath/help/bedgraph.html |
| Wig/BigWig | Quantitative Information | http://genome.ucsc.edu/goldenPath/help/wiggle.html |
| VCF | Format for Mutation Analysis Result | http://www.1000genomes.org/wiki/Analysis/Variant%20Call%20Format/vcf-variant-call-format-version-41 |
| GTF/GFF | Gene Structure Information | http://mblab.wustl.edu/GTF22.html |
| TSV/CSV | Tab-Separated Values format. If each columns are separated by tabs, any type and any amount of columns are available. |